library.h express More...

#include <library.h>

Public Member Functions
	Library ()
	Library constructor sets initial values for parameters.
Public Attributes
std::string	in_file_name
	Path to the input file.
std::string	out_file_name
	Path to the out file.
boost::shared_ptr< MapParser >	map_parser
	A pointer to the MapParser for parsing the input alignment file for this library.
boost::shared_ptr < LengthDistribution >	fld
	A pointer to the fragment length distribution object for this library.
boost::shared_ptr< MismatchTable >	mismatch_table
	A pointer to the MismatchTable containing the learned error distribution for this library.
boost::shared_ptr< BiasBoss >	bias_table
	A pointer to the BiasBoss containing the learned bias distribution for this library.
boost::shared_ptr< TargetTable >	targ_table
	A pointer to the TargetTable containing the target parameters (abundance, effective length) for this library.
size_t	n
	The number of the next read to be processed (starting at 1).
double	mass_n
	The mass of the next read to be processed (logged).

Detailed Description

library.h express

Created by Adam Roberts on 5/12/12. Copyright (c) 2012 Adam Roberts. All rights reserved. The Library struct holds pointers to the global parameter tables for a set of reads from the same library preparation.