Mathematical and Computational Biology
in the Department of Mathematics
at UC Berkeley
- AMAP Protein multiple alignment
- GENEMAPPER Reference based gene annotation
- KBROWSER Browser for multiple genomes and their alignments
- MAVID Multiple alignment of large genomic sequences
- MERCATOR Homlogy mapping
- MJOIN Neighbor joining with subtree weights
- riskPoly Computation of risk polynomials
- SLAM Pairwise simultaneous alignment and gene finding
- SLIM Minimum network design for optimizing the search space for pair hidden Markov models
- TangleSolve Analysis and visualization of DNA recombination mechanisms
- treeSVD Building phylogenetic trees and testing splits using singular value decomposition
DNA