| Date |
Speaker |
Affiliation |
Talk |
January 26
|
Carlos Bustamante
|
Stanford
|
Population genetics in the
personal genome era
|
February 2
|
Benny Chor
|
Tel-Aviv U
|
Genomic DNA
k-mer spectra: models and modalities
|
February 9
|
Colin Dewey
|
U Wisconsin
|
Beyond counts: quantifying transcript
expression with RNA-Seq and generative probabilistic models
|
| February 16 |
Jin Yu
|
UC Berkeley
|
Modeling molecular machines that drive
genetic process
|
February 23
|
Adam Roberts
|
UC Berkeley
|
Improving RNA-Seq expression estimates
by correcting for fragment bias
|
March 2
|
No
seminar due to a job talk today
|
| March 9 |
David Koslicki
|
Penn State
|
Topological entropy of DNA sequences
|
| March 16 |
Monica Nicolau
|
Stanford
|
Progression analysis of disease:
extracting information from the intrinsic geometry of microarray data
sets
|
March 30
|
Chuong (Tom) Do
|
23andMe, Inc.
|
Genome-wide association studies of hundreds
of phenotypes, using tens of thousands of individuals
|
April 6
|
Matthias Steinruecken
|
UC Berkeley
|
Importance
sampling
for
Lambda-coalescents
|
| April 13 |
Kirk Lohmueller |
UC Berkeley |
Negative natural selection affects
multiple aspects of genetic variation across the human genome
|
| April 20 |
Vladimir Jojic
|
Stanford
|
A model of differential regulation in
immune cell development and disease progression
|
| April 27 |
Mariel Vazquez
|
SFSU
|
DNA unknotting and unlinking
|
May 4
|
Jotun Hein
|
Oxford
|
Algorithms
for statistical alignment and annotation of many sequences
|
May 11
|
Pall Melsted
|
U Chicago
|
De novo
transcriptome assembly
|
